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Report for Sequence Feature Glyma02g17470

Feature Type:gene_model
Chromosome:Gm02
Start:15722317
stop:15724906
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G47710AT Annotation by Michelle Graham. TAIR10: Adenine nucleotide alpha hydrolases-like superfamily protein | chr2:19555045-19555956 REVERSE LENGTH=162 SoyBaseE_val: 1.00E-71ISS
GO:0002238GO-bp Annotation by Michelle Graham. GO Biological Process: response to molecule of fungal origin SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF00582PFAM Universal stress protein family JGI ISS
UniRef100_B4UW73UniRef Annotation by Michelle Graham. Most informative UniRef hit: Universal stress protein n=1 Tax=Arachis hypogaea RepID=B4UW73_ARAHY SoyBaseE_val: 2.00E-83ISS
UniRef100_C6TGN9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TGN9_SOYBN SoyBaseE_val: 2.00E-112ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma10g02340 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g155600 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma02g17470.3   sequence type=transcript   gene model=Glyma02g17470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGCTCATTCGAGATTTGAATGAAAGTATCGTACGCTACATACCAATAAAGGGGAAAAAAAAAAGTATCTAACTCTACAATTATTTTAAACAAATTTAGTTTTAATCTTATCTTAGGGAGCATATTCAGCGTGCTTCAACTTGATTATCATTCGAGTGGTTTTGTATATATTGGCTAAGAAAACAAAATTAAAAATAAGTTATTATATTTTAAAATAATTCAAAGTATTGAAGGAAAGCTATTTTATAAAAACATTAAATTCTGGCCTCTCTGGTATCCTACATTATCCGCAAAGGGCGAGAAGCCGCGACGTCGTTTTCAGACACGGCTTCGATAGTGAAGCAACGATTCAATAGTTGACAAGTGGTTTTGGTTTGATATATAGATGTGGTGCGCGTCGTGTTGTTCGAAGGAAGTGAAGTAAAGACTAAAGAGAGTTGTGGTGTGGTGGTGGTTGTCGTTTTTGAAATGGCAGCGTCGTCGTCAGAGAAGCAAGTGGTGGTGATAGGCATAGACGACAGCGAGCAGAGCACGTACGCGTTGAATTGGGCTCTGGATAACTTTTTCCCGAGCCCAATTTTCAAGCTCGTTCTCATCCACTCCAGGCCCACCGCCACCTCCGCTGTGGGCTTCGCCGGCCCTGTGTTTGCAGGAGCCGCTGAGGTCTTGCCTATTGTAGATTCCGATTTGAGAAAGATTGGCGCCAGAGTCCTCGAAACCGCTAAACAACTTTGCATCAACAAATCCGTAAATGATGTGACAGCAGAAGTGGTGGAAGGTGATCCTAGAAATGTTCTTTGTGATGCTGTAGATAAGTACCGTGCTGCAATGTTGGTTGTGGGTAGTCATGGTTATGGGGCTATAAAAAGGTAGTGTCAGTGACTATTGTGCTCATCATGCTCACTGCACTGTGATGATCGTGAAGAAGCCAAAAATCAAACACTGATCTGTAATGGCTGCGTCTATATAGTACAACAATAAACATAATCCTTTCAGCCAAAGAAGAGAGAAAGAAAATAATGTTCACAGAAATTCGTAACTATGCTTGTTGTATGGATATGGCTTATTGACTTTATGGTTTGATACGTTGAGGCACAGTTTATTTTTAAAGATGGAACCATCAGAAAATATGTACGTATCAGGACTTTACCTTACATTGTACACGAAAAGTTCTTGAACTGATGAGTTCAATTCCATTACTGCTCTTTTCATCCTTAATAAAATAAAATAGTAAAAAAATATTGTACTAGTTTATTGCAATGCACTACTAGCCTGAACAATTTCTAGTTATTCATTTGTTGGCTTGAATATGATTTTGGTTATGGAAAGATAGGGTTATTTTGATTTTAGTCCCGTAATTTTTAGTGTACCAATGTGCTGGTTAATAATAATAATAAAAAAAGGTGTACTAGTGTGCTGCGTTGCACTGTAATTTTTAGGTTGAATTTCTTATGCATTTAAAATAATTTATAACGTCAATCTAGTTGACGGGTAATTT

>Glyma02g17470.4   sequence type=transcript   gene model=Glyma02g17470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGCTCATTCGAGATTTGAATGAAAGTATCGTACGCTACATACCAATAAAGGGGAAAAAAAAAAGTATCTAACTCTACAATTATTTTAAACAAATTTAGTTTTAATCTTATCTTAGGGAGCATATTCAGCGTGCTTCAACTTGATTATCATTCGAGTGGTTTTGTATATATTGGCTAAGAAAACAAAATTAAAAATAAGTTATTATATTTTAAAATAATTCAAAGTATTGAAGGAAAGCTATTTTATAAAAACATTAAATTCTGGCCTCTCTGGTATCCTACATTATCCGCAAAGGGCGAGAAGCCGCGACGTCGTTTTCAGACACGGCTTCGATAGTGAAGCAACGATTCAATAGTTGACAAGTGGTTTTGGTTTGATATATAGATGTGGTGCGCGTCGTGTTGTTCGAAGGAAGTGAAGTAAAGACTAAAGAGAGTTGTGGTGTGGTGGTGGTTGTCGTTTTTGAAATGGCAGCGTCGTCGTCAGAGAAGCAAGTGGTGGTGATAGGCATAGACGACAGCGAGCAGAGCACGTACGCGTTGAATTGGGCTCTGGATAACTTTTTCCCGAGCCCAATTTTCAAGCTCGTTCTCATCCACTCCAGGCCCACCGCCACCTCCGCTGTGGGCTTCGCCGGCCCTGATTCCGATTTGAGAAAGATTGGCGCCAGAGTCCTCGAAACCGCTAAACAACTTTGCATCAACAAATCCGTAAATGATGTGACAGCAGAAGTGGTGGAAGGTGATCCTAGAAATGTTCTTTGTGATGCTGTAGATAAGTACCGTGCTGCAATGTTGGTTGTGGGTAGTCATGGTTATGGGGCTATAAAAAGGGCGGTTTTAGGTAGTGTCAGTGACTATTGTGCTCATCATGCTCACTGCACTGTGATGATCGTGAAGAAGCCAAAAATCAAACACTGATCTGTAATGGCTGCGTCTATATAGTACAACAATAAACATAATCCTTTCAGCCAAAGAAGAGAGAAAGAAAATAATGTTCACAGAAATTCGTAACTATGCTTGTTGTATGGATATGGCTTATTGACTTTATGGTTTGATACGTTGAGGCACAGTTTATTTTTAAAGATGGAACCATCAGAAAATATGTACGTATCAGGACTTTACCTTACATTGTACACGAAAAGTTCTTGAACTGATGAGTTCAATTCCATTACTGCTCTTTTCATCCTTAATAAAATAAAATAGTAAAAAAATATTGTACTAGTTTATTGCAATGCACTACTAGCCTGAACAATTTCTAGTTATTCATTTGTTGGCTTGAATATGATTTTGGTTATGGAAAGATAGGGTTATTTTGATTTTAGTCCCGTAATTTTTAGTGTACCAATGTGCTGGTTAATAATAATAATAAAAAAAGGTGTACTAGTGTGCTGCGTTGCACTGTAATTTTTAGGTTGAATTTCTTATGCATTTAAAATAATTTATAACGTCAATCTAGTTGACGGGTAATTT

>Glyma02g17470.5   sequence type=transcript   gene model=Glyma02g17470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGCTCATTCGAGATTTGAATGAAAGTATCGTACGCTACATACCAATAAAGGGGAAAAAAAAAAGTATCTAACTCTACAATTATTTTAAACAAATTTAGTTTTAATCTTATCTTAGGGAGCATATTCAGCGTGCTTCAACTTGATTATCATTCGAGTGGTTTTGTATATATTGGCTAAGAAAACAAAATTAAAAATAAGTTATTATATTTTAAAATAATTCAAAGTATTGAAGGAAAGCTATTTTATAAAAACATTAAATTCTGGCCTCTCTGGTATCCTACATTATCCGCAAAGGGCGAGAAGCCGCGACGTCGTTTTCAGACACGGCTTCGATAGTGAAGCAACGATTCAATAGTTGACAAGTGGTTTTGGTTTGATATATAGATGTGGTGCGCGTCGTGTTGTTCGAAGGAAGTGAAGTAAAGACTAAAGAGAGTTGTGGTGTGGTGGTGGTTGTCGTTTTTGAAATGGCAGCGTCGTCGTCAGAGAAGCAAGTGGTGGTGATAGGCATAGACGACAGCGAGCAGAGCACGTACGCGTTGAATTGGGCTCTGGATAACTTTTTCCCGAGCCCAATTTTCAAGCTCGTTCTCATCCACTCCAGGCCCACCGCCACCTCCGCTGTGGGCTTCGCCGGCCCTGCCGCTGAGGTCTTGCCTATTGTAGATTCCGATTTGAGAAAGATTGGCGCCAGAGTCCTCGAAACCGCTAAACAACTTTGCATCAACAAATCCGTAAATGATGTGACAGCAGAAGTGGTGGAAGGTGATCCTAGAAATGTTCTTTGTGATGCTGTAGATAAGTACCGTGCTGCAATGTTGGTTGTGGGTAGTCATGGTTATGGGGCTATAAAAAGGGCGGTTTTAGGTAGTGTCAGTGACTATTGTGCTCATCATGCTCACTGCACTGTGATGATCGTGAAGAAGCCAAAAATCAAACACTGATCTGTAATGGCTGCGTCTATATAGTACAACAATAAACATAATCCTTTCAGCCAAAGAAGAGAGAAAGAAAATAATGTTCACAGAAATTCGTAACTATGCTTGTTGTATGGATATGGCTTATTGACTTTATGGTTTGATACGTTGAGGCACAGTTTATTTTTAAAGATGGAACCATCAGAAAATATGTACGTATCAGGACTTTACCTTACATTGTACACGAAAAGTTCTTGAACTGATGAGTTCAATTCCATTACTGCTCTTTTCATCCTTAATAAAATAAAATAGTAAAAAAATATTGTACTAGTTTATTGCAATGCACTACTAGCCTGAACAATTTCTAGTTATTCATTTGTTGGCTTGAATATGATTTTGGTTATGGAAAGATAGGGTTATTTTGATTTTAGTCCCGTAATTTTTAGTGTACCAATGTGCTGGTTAATAATAATAATAAAAAAAGGTGTACTAGTGTGCTGCGTTGCACTGTAATTTTTAGGTTGAATTTCTTATGCATTTAAAATAATTTATAACGTCAATCTAGTTGACGGGTAATTT

>Glyma02g17470.6   sequence type=transcript   gene model=Glyma02g17470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGCTCATTCGAGATTTGAATGAAAGTATCGTACGCTACATACCAATAAAGGGGAAAAAAAAAAGTATCTAACTCTACAATTATTTTAAACAAATTTAGTTTTAATCTTATCTTAGGGAGCATATTCAGCGTGCTTCAACTTGATTATCATTCGAGTGGTTTTGTATATATTGGCTAAGAAAACAAAATTAAAAATAAGTTATTATATTTTAAAATAATTCAAAGTATTGAAGGAAAGCTATTTTATAAAAACATTAAATTCTGGCCTCTCTGGTATCCTACATTATCCGCAAAGGGCGAGAAGCCGCGACGTCGTTTTCAGACACGGCTTCGATAGTGAAGCAACGATTCAATAGTTGACAAGTGGTTTTGGTTTGATATATAGATGTGGTGCGCGTCGTGTTGTTCGAAGGAAGTGAAGTAAAGACTAAAGAGAGTTGTGGTGTGGTGGTGGTTGTCGTTTTTGAAATGGCAGCGTCGTCGTCAGAGAAGCAAGTGGTGGTGATAGGCATAGACGACAGCGAGCAGAGCACGTACGCGTTGAATTGGGCTCTGGATAACTTTTTCCCGAGCCCAATTTTCAAGCTCGTTCTCATCCACTCCAGGCCCACCGCCACCTCCGCTGTGGGCTTCGCCGGCCCTGGAGCCGCTGAGGTCTTGCCTATTGTAGATTCCGATTTGAGAAAGATTGGCGCCAGAGTCCTCGAAACCGCTAAACAACTTTGCATCAACAAATCCGTAAATGATGTGACAGCAGAAGTGGTGGAAGGTGATCCTAGAAATGTTCTTTGTGATGCTGTAGATAAGTACCGTGCTGCAATGTTGGTTGTGGGTAGTCATGGTTATGGGGCTATAAAAAGGGCGGTTTTAGGTAGTGTCAGTGACTATTGTGCTCATCATGCTCACTGCACTGTGATGATCGTGAAGAAGCCAAAAATCAAACACTGATCTGTAATGGCTGCGTCTATATAGTACAACAATAAACATAATCCTTTCAGCCAAAGAAGAGAGAAAGAAAATAATGTTCACAGAAATTCGTAACTATGCTTGTTGTATGGATATGGCTTATTGACTTTATGGTTTGATACGTTGAGGCACAGTTTATTTTTAAAGATGGAACCATCAGAAAATATGTACGTATCAGGACTTTACCTTACATTGTACACGAAAAGTTCTTGAACTGATGAGTTCAATTCCATTACTGCTCTTTTCATCCTTAATAAAATAAAATAGTAAAAAAATATTGTACTAGTTTATTGCAATGCACTACTAGCCTGAACAATTTCTAGTTATTCATTTGTTGGCTTGAATATGATTTTGGTTATGGAAAGATAGGGTTATTTTGATTTTAGTCCCGTAATTTTTAGTGTACCAATGTGCTGGTTAATAATAATAATAAAAAAAGGTGTACTAGTGTGCTGCGTTGCACTGTAATTTTTAGGTTGAATTTCTTATGCATTTAAAATAATTTATAACGTCAATCTAGTTGACGGGTAATTT

>Glyma02g17470.2   sequence type=CDS   gene model=Glyma02g17470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGCGTCGTCGTCAGAGAAGCAAGTGGTGGTGATAGGCATAGACGACAGCGAGCAGAGCACGTACGCGTTGAATTGGGCTCTGGATAACTTTTTCCCGAGCCCAATTTTCAAGCTCGTTCTCATCCACTCCAGGCCCACCGCCACCTCCGCTGTGGGCTTCGCCGGCCCTGGAGCCGCTGAGGTCTTGCCTATTGTAGATTCCGATTTGAGAAAGATTGGCGCCAGAGTCCTCGAAACCGCTAAACAACTTTGCATCAACAAATCCGTAATTCTGTTTTTCTTCCTCTTTCCATGCCTTTTCGTTAATCTCTTAATCCTTCTTCTGCATGTTTGTTTTTCACGTTTAACTTTACCGGTTAACGTGATTTTAGGTAAATTTTCGTATGCATGA

>Glyma02g17470.3   sequence type=CDS   gene model=Glyma02g17470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGCGTCGTCGTCAGAGAAGCAAGTGGTGGTGATAGGCATAGACGACAGCGAGCAGAGCACGTACGCGTTGAATTGGGCTCTGGATAACTTTTTCCCGAGCCCAATTTTCAAGCTCGTTCTCATCCACTCCAGGCCCACCGCCACCTCCGCTGTGGGCTTCGCCGGCCCTGTGTTTGCAGGAGCCGCTGAGGTCTTGCCTATTGTAGATTCCGATTTGAGAAAGATTGGCGCCAGAGTCCTCGAAACCGCTAAACAACTTTGCATCAACAAATCCGTAAATGATGTGACAGCAGAAGTGGTGGAAGGTGATCCTAGAAATGTTCTTTGTGATGCTGTAGATAAGTACCGTGCTGCAATGTTGGTTGTGGGTAGTCATGGTTATGGGGCTATAAAAAGGTAG

>Glyma02g17470.4   sequence type=CDS   gene model=Glyma02g17470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGCGTCGTCGTCAGAGAAGCAAGTGGTGGTGATAGGCATAGACGACAGCGAGCAGAGCACGTACGCGTTGAATTGGGCTCTGGATAACTTTTTCCCGAGCCCAATTTTCAAGCTCGTTCTCATCCACTCCAGGCCCACCGCCACCTCCGCTGTGGGCTTCGCCGGCCCTGATTCCGATTTGAGAAAGATTGGCGCCAGAGTCCTCGAAACCGCTAAACAACTTTGCATCAACAAATCCGTAAATGATGTGACAGCAGAAGTGGTGGAAGGTGATCCTAGAAATGTTCTTTGTGATGCTGTAGATAAGTACCGTGCTGCAATGTTGGTTGTGGGTAGTCATGGTTATGGGGCTATAAAAAGGGCGGTTTTAGGTAGTGTCAGTGACTATTGTGCTCATCATGCTCACTGCACTGTGATGATCGTGAAGAAGCCAAAAATCAAACACTGA

>Glyma02g17470.5   sequence type=CDS   gene model=Glyma02g17470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGCGTCGTCGTCAGAGAAGCAAGTGGTGGTGATAGGCATAGACGACAGCGAGCAGAGCACGTACGCGTTGAATTGGGCTCTGGATAACTTTTTCCCGAGCCCAATTTTCAAGCTCGTTCTCATCCACTCCAGGCCCACCGCCACCTCCGCTGTGGGCTTCGCCGGCCCTGCCGCTGAGGTCTTGCCTATTGTAGATTCCGATTTGAGAAAGATTGGCGCCAGAGTCCTCGAAACCGCTAAACAACTTTGCATCAACAAATCCGTAAATGATGTGACAGCAGAAGTGGTGGAAGGTGATCCTAGAAATGTTCTTTGTGATGCTGTAGATAAGTACCGTGCTGCAATGTTGGTTGTGGGTAGTCATGGTTATGGGGCTATAAAAAGGGCGGTTTTAGGTAGTGTCAGTGACTATTGTGCTCATCATGCTCACTGCACTGTGATGATCGTGAAGAAGCCAAAAATCAAACACTGA

>Glyma02g17470.6   sequence type=CDS   gene model=Glyma02g17470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGCGTCGTCGTCAGAGAAGCAAGTGGTGGTGATAGGCATAGACGACAGCGAGCAGAGCACGTACGCGTTGAATTGGGCTCTGGATAACTTTTTCCCGAGCCCAATTTTCAAGCTCGTTCTCATCCACTCCAGGCCCACCGCCACCTCCGCTGTGGGCTTCGCCGGCCCTGGAGCCGCTGAGGTCTTGCCTATTGTAGATTCCGATTTGAGAAAGATTGGCGCCAGAGTCCTCGAAACCGCTAAACAACTTTGCATCAACAAATCCGTAAATGATGTGACAGCAGAAGTGGTGGAAGGTGATCCTAGAAATGTTCTTTGTGATGCTGTAGATAAGTACCGTGCTGCAATGTTGGTTGTGGGTAGTCATGGTTATGGGGCTATAAAAAGGGCGGTTTTAGGTAGTGTCAGTGACTATTGTGCTCATCATGCTCACTGCACTGTGATGATCGTGAAGAAGCCAAAAATCAAACACTGA

>Glyma02g17470.2   sequence type=predicted peptide   gene model=Glyma02g17470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAASSSEKQVVVIGIDDSEQSTYALNWALDNFFPSPIFKLVLIHSRPTATSAVGFAGPGAAEVLPIVDSDLRKIGARVLETAKQLCINKSVILFFFLFPCLFVNLLILLLHVCFSRLTLPVNVILGKFSYA*

>Glyma02g17470.3   sequence type=predicted peptide   gene model=Glyma02g17470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAASSSEKQVVVIGIDDSEQSTYALNWALDNFFPSPIFKLVLIHSRPTATSAVGFAGPVFAGAAEVLPIVDSDLRKIGARVLETAKQLCINKSVNDVTAEVVEGDPRNVLCDAVDKYRAAMLVVGSHGYGAIKR*

>Glyma02g17470.4   sequence type=predicted peptide   gene model=Glyma02g17470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAASSSEKQVVVIGIDDSEQSTYALNWALDNFFPSPIFKLVLIHSRPTATSAVGFAGPDSDLRKIGARVLETAKQLCINKSVNDVTAEVVEGDPRNVLCDAVDKYRAAMLVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKKPKIKH*

>Glyma02g17470.5   sequence type=predicted peptide   gene model=Glyma02g17470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAASSSEKQVVVIGIDDSEQSTYALNWALDNFFPSPIFKLVLIHSRPTATSAVGFAGPAAEVLPIVDSDLRKIGARVLETAKQLCINKSVNDVTAEVVEGDPRNVLCDAVDKYRAAMLVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKKPKIKH*

>Glyma02g17470.6   sequence type=predicted peptide   gene model=Glyma02g17470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAASSSEKQVVVIGIDDSEQSTYALNWALDNFFPSPIFKLVLIHSRPTATSAVGFAGPGAAEVLPIVDSDLRKIGARVLETAKQLCINKSVNDVTAEVVEGDPRNVLCDAVDKYRAAMLVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKKPKIKH*







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